PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0227261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 454aa    MW: 51944 Da    PI: 9.5795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0227261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-143911914100
                             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                               l +p +f++++g++   s  +t++ + g +Wev l  +++ g++++ kGW +F +   L  +D +vF ++g+s+f   v++f+ks
  RcHm_v2.0_Chr7g0227261  39 IKLGIPEDFVSKYGKD--LSNSVTFRLPYGSEWEVGL--TRYNGEVWFDKGWPDFSNFYSLGYNDLLVFGYEGKSRF--QVSIFDKS 119
                             5688*********977..8889***************..*********************************98999..*****985 PP
2B339.88e-13362451497
                             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                             v +++++ + + l+lp  f+  h +k   + + +l+ ++g +W v +    ++ r +l++G  +Fv+ n+Lk+gD +vF l+++ +f
  RcHm_v2.0_Chr7g0227261 362 VSIKPSYIRGNYLWLPTVFVHGHLIK--WPSDAILKVSDGARWPVCF--HYNKARATLQGGFAKFVRGNNLKAGDACVFVLTNNIKF 444
                             556788888899********888555..34489**************..55666688***********************9987777 PP

                             ..EEEEE CS
                      B3  91 elvvkvf 97 
                              + v +f
  RcHm_v2.0_Chr7g0227261 445 LFDVFIF 451
                             5555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MTSYLSWKFD HRKFGSQPTF LSTTPHFLSI ILDDTSRVIK LGIPEDFVSK YGKDLSNSVT  60
FRLPYGSEWE VGLTRYNGEV WFDKGWPDFS NFYSLGYNDL LVFGYEGKSR FQVSIFDKST  120
IEIEYPVKVP NIEESDEHDD SSVEILEDFP LYLRKARETS RLPSSLPRVK DRTISSGTAK  180
INLGFEKSMK KKETHGSKSG RKSSVILCVP GGSKTWTVAL NYQQKARRVS FNTGWIEFLR  240
DNNLKVWDVC DNEDNVTELD DAYDDEDADD DSIEILNHFP SFTKGKEKFA LPSQLHKRRR  300
TTSSTKAEST MKHVGGCSKT QKFLKQRPEV FKRIHPVMAS IGRDLAFQRA TAFKPPHPHF  360
AVSIKPSYIR GNYLWLPTVF VHGHLIKWPS DAILKVSDGA RWPVCFHYNK ARATLQGGFA  420
KFVRGNNLKA GDACVFVLTN NIKFLFDVFI FRTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.18e-19B3 family protein