PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0219621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 679aa MW: 77911.7 Da PI: 8.2106

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0219621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.6	3.1e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++++k +r+r+++r+gC+a ++++k++ ++w+vt + + RcHm_v2.0_Chr7g0219621 62 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPSKTSNESKPQRNRKSSRCGCQAYMRISKTTelgASEWRVTGFAN 148 69***********9998877356667999*************99*****************9988899***** PP FAR1 84 eHnHela 90 +HnHel RcHm_v2.0_Chr7g0219621 149 HHNHELL 155 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MSEEAGVMLV VYDDPSDQRS FSLDDTSSSE ESLDETRLSL ETTNDVIPYI GKRFATHDAA 60 YEYYSEFAKQ CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPSKTSNE SKPQRNRKSS 120 RCGCQAYMRI SKTTELGASE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF 180 AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE 240 KDPNFKFEYT IDSKNRLENI AWSYASSVQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGIN 300 NYGMPCFFGC VLLREESVRS FSWALKAFLG FMYGKAPRTI LTDQNLFLKE AISGEMPTTK 360 HALCVWMIVA KFPSWFNAVL GERYNEWKSE FYRIYNLESI EDFELGWRDL VNSFGLHSNR 420 HIVNLYGLRS LWALPFLRSH FFAGMATIGQ SKSINAFIQR FLSAQTRLAH FIEQVAVAVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASVLTPYAFS KLQEQLVLAA HYASFQMDDG 540 FLVRHHTKGD GGRKVYWVPR EGIISCGCHH FEFSGTLCRH ALRVLSTGNC FQIPDRYLPV 600 RWRRISMPSA KLLHSFPSDH AERIQLLQSM VSTLVTESSK SRERLDIATE QVSILLSQIR 660 EQPVSLQSTR DITPKNRNI

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MSEEAGVMLV VYDDPSDQRS FSLDDTSSSE ESLDETRLSL ETTNDVIPYI GKRFATHDAA  60
YEYYSEFAKQ CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPSKTSNE SKPQRNRKSS  120
RCGCQAYMRI SKTTELGASE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE  240
KDPNFKFEYT IDSKNRLENI AWSYASSVQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC VLLREESVRS FSWALKAFLG FMYGKAPRTI LTDQNLFLKE AISGEMPTTK  360
HALCVWMIVA KFPSWFNAVL GERYNEWKSE FYRIYNLESI EDFELGWRDL VNSFGLHSNR  420
HIVNLYGLRS LWALPFLRSH FFAGMATIGQ SKSINAFIQR FLSAQTRLAH FIEQVAVAVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMESHA ASVLTPYAFS KLQEQLVLAA HYASFQMDDG  540
FLVRHHTKGD GGRKVYWVPR EGIISCGCHH FEFSGTLCRH ALRVLSTGNC FQIPDRYLPV  600
RWRRISMPSA KLLHSFPSDH AERIQLLQSM VSTLVTESSK SRERLDIATE QVSILLSQIR  660
EQPVSLQSTR DITPKNRNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein