PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0213331

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 330aa MW: 36784.3 Da PI: 9.5772

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0213331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.8	3.9e-23	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ RcHm_v2.0_Chr7g0213331 76 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 120 79***************************************9986 PP
2	QLQ	49.8	1e-17	14	49	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q++++++Q+l++KyL a++PvPp+Ll++i++ RcHm_v2.0_Chr7g0213331 14 LFTVSQWAEMEHQALVFKYLKAGLPVPPDLLVPIRN 49 69********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MSRSLVGGGG HAPLFTVSQW AEMEHQALVF KYLKAGLPVP PDLLVPIRNS FNLIYPDFLR 60 HPASLAYASF CGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVES 120 QTASQSLSTV ASSDIRTGSR SHSGSFQNMP LHSPGNSGSL CFGSDVSQLK MEPIPYGIVK 180 RGNRVLDGAE EHNFMPEASG SARSAGVDST IDSPWRLMTS HVPLNSSSEP RNGSFLLNNS 240 QLQTLQDSEP LTVDAAMTKQ QQRQYVGGEF GVLRSLKQEQ HSLQPFFDEW PKSRDLGFHH 300 NDPRSTNNLS NTTQLSMSNL MAPSNFFKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-42	GRF family protein