PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0212241

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 463aa MW: 51937.6 Da PI: 6.5104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0212241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	301	346	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+++Er+RRd++N+ f Lr+++P+ K++Ka++L A+ YI++L RcHm_v2.0_Chr7g0212241 301 SHSKAERQRRDKLNHLFYALRSVVPNV-----SKMDKASTLSDAIVYINKL 346 7***********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MEACFSPHNL CQETSAATLQ QHLQFILQNR PEFWVYSIFW QASKDGHNAI SLSWAGGHFR 60 GTRDFSSKTS TTNKLDNNYQ PTIGFDLETP KKGINKEVEA LFHEDMNMDG LFDINGDVTD 120 SEWFYFYTVS NLTQSFAAGL ESNNILGHAF CSGAFVWLAG DHELRFYECE RVKEARMHGI 180 QTLVCIATPF GVLELASLEV IKQDWGFVQL CKSIFGSDLI TTTASVSNSK QGHVHVPQLQ 240 DGIFSRSVQK EWTTQGDMRK TVNLSGSSSD SGPYKSTSNT RLKERGRFDK HVNANQDSPI 300 SHSKAERQRR DKLNHLFYAL RSVVPNVSKM DKASTLSDAI VYINKLKTTI EELEAKIQAK 360 PKKPKASIMI DNILDSQSTS TAAMEVDVDV KIVGSEAIIR VWCPNNQDDP CARLMNALRD 420 LELQIHRASI SSVNELILQD VIVRVPDGFA SEEVIKTAII NRF

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MEACFSPHNL CQETSAATLQ QHLQFILQNR PEFWVYSIFW QASKDGHNAI SLSWAGGHFR  60
GTRDFSSKTS TTNKLDNNYQ PTIGFDLETP KKGINKEVEA LFHEDMNMDG LFDINGDVTD  120
SEWFYFYTVS NLTQSFAAGL ESNNILGHAF CSGAFVWLAG DHELRFYECE RVKEARMHGI  180
QTLVCIATPF GVLELASLEV IKQDWGFVQL CKSIFGSDLI TTTASVSNSK QGHVHVPQLQ  240
DGIFSRSVQK EWTTQGDMRK TVNLSGSSSD SGPYKSTSNT RLKERGRFDK HVNANQDSPI  300
SHSKAERQRR DKLNHLFYAL RSVVPNVSKM DKASTLSDAI VYINKLKTTI EELEAKIQAK  360
PKKPKASIMI DNILDSQSTS TAAMEVDVDV KIVGSEAIIR VWCPNNQDDP CARLMNALRD  420
LELQIHRASI SSVNELILQD VIVRVPDGFA SEEVIKTAII NRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	5e-56	bHLH family protein