PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0211831
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 339aa    MW: 38295.9 Da    PI: 10.3746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0211831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16146192148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g WT eEd +l ++vkq+G   W+ Ia+++  gR +kqc++rw+++l
  RcHm_v2.0_Chr7g0211831 146 KGQWTDEEDRKLMRLVKQYGVTKWAQIAEKLV-GRAGKQCRERWHNHL 192
                             799*****************************.*************97 PP
2Myb_DNA-binding56.94.9e-18198240145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +++WT+eE+++lv+++++ G++ W+ Ia++++ gRt++ +k++w+
  RcHm_v2.0_Chr7g0211831 198 KDSWTEEEEKILVEVHAEVGNR-WAEIAKRIP-GRTENAIKNHWN 240
                             679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MEGEDGAASD HLHHHHGVYG IRNNHIQNPH QHHNQLFKPG PPLTAIDRFL WSQNNAKNKE  60
RIISSNGFSS FGGAMGDLHA CSNWPPSSLG ETSLDELLFL DHGEAMTWPP EKIQNPNMGF  120
KEDQVKVGSK GVGKRAKTGS SVPLIKGQWT DEEDRKLMRL VKQYGVTKWA QIAEKLVGRA  180
GKQCRERWHN HLRPDIKKDS WTEEEEKILV EVHAEVGNRW AEIAKRIPGR TENAIKNHWN  240
ATKRRQNSRR KNKQTYTKNG PSSSNKPPQP SILQNYIRSK IFNNKANNNS SSNAPPTPSN  300
ISTTTPTSPS NLTQEEPSKS PSIFCSRTHR IYLVVNTLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.17e-58MYB family protein