PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0209751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 693aa MW: 76197.6 Da PI: 5.427

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0209751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	521	566	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI +L RcHm_v2.0_Chr7g0209751 521 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 566 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MTDYRIPPTM NLWTDDNASL MEAFMSNSDL TSFWAAQPAQ PATQPAHPLH QPQSSASTSD 60 YPRPPAAQSQ SQSQPPPPPA AAPFNQETLM QRLQALIEGA RESWTYAIFW QSSYEMSGAS 120 VLGWGEGFYK DERDKVKAKP KTTTSLVEQE YRKKVLRDLN SLISGADNTA EDDVVDQEVT 180 DTEWFFLVSM TQNFVNGVGL PGQAFFQSNP VWVAGPDRLA DSPCERARQG QLFGLQTMVC 240 VPTANGVVEL GSTELIYQSA DLMNKVRVLF DFNNLEVGSW PMGGAADQGE NDPSSLWIND 300 NPASTIEVVK DSVHMGPATS GPSTSNHQIS KPIQFDSHPS SSGLSENPSA VLQVQSQSNH 360 HHQAQQQVQT QSFFTRELNF SDYNAYDGSS VKNSNSNSHS LKPESGEILN FGESKRTSYS 420 ANNGKLFSAQ SQIAAEDNNK KKRSPPSRGS NDEGILSFSS GVILPSSSGV VKSSAGPVDS 480 DHSDLEASVA KEADSSRVVD PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL 540 RAVVPNVSKM DKASLLGDAI SYITELKTKL QTTESDKEDL HKQVETLSKE LQESRTSSGL 600 DQELKGSNKL IDLDIDVKIL GWDARIQIQC SKKNHPAARL MAALMELDLD VHHASVSVVN 660 DLMIQQATVR MGSRIYTQEQ LRLALSAKVG DAR

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MTDYRIPPTM NLWTDDNASL MEAFMSNSDL TSFWAAQPAQ PATQPAHPLH QPQSSASTSD  60
YPRPPAAQSQ SQSQPPPPPA AAPFNQETLM QRLQALIEGA RESWTYAIFW QSSYEMSGAS  120
VLGWGEGFYK DERDKVKAKP KTTTSLVEQE YRKKVLRDLN SLISGADNTA EDDVVDQEVT  180
DTEWFFLVSM TQNFVNGVGL PGQAFFQSNP VWVAGPDRLA DSPCERARQG QLFGLQTMVC  240
VPTANGVVEL GSTELIYQSA DLMNKVRVLF DFNNLEVGSW PMGGAADQGE NDPSSLWIND  300
NPASTIEVVK DSVHMGPATS GPSTSNHQIS KPIQFDSHPS SSGLSENPSA VLQVQSQSNH  360
HHQAQQQVQT QSFFTRELNF SDYNAYDGSS VKNSNSNSHS LKPESGEILN FGESKRTSYS  420
ANNGKLFSAQ SQIAAEDNNK KKRSPPSRGS NDEGILSFSS GVILPSSSGV VKSSAGPVDS  480
DHSDLEASVA KEADSSRVVD PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  540
RAVVPNVSKM DKASLLGDAI SYITELKTKL QTTESDKEDL HKQVETLSKE LQESRTSSGL  600
DQELKGSNKL IDLDIDVKIL GWDARIQIQC SKKNHPAARL MAALMELDLD VHHASVSVVN  660
DLMIQQATVR MGSRIYTQEQ LRLALSAKVG DAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	503	511	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein