PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 254aa    MW: 29292.6 Da    PI: 9.3893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-1092155155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksLq 55 
                             ++ +h e+Er+RR+++ + +++Lr++lP  +            ++K s ++ + +A +YIk+ q
  RcHm_v2.0_Chr7g0199961  92 KKIMHREIERQRRQEMATLYANLRSHLPLEYlkqkkilflFWLQGKRSISDHVHQAANYIKHIQ 155
                             5789*************************7779****9995566899***************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDFIPSNIFQ FDQALDHDGE LLRISRVPCV EHKIRENHAH PLPHPLNPPP NQKEDPHNYD  60
RFMSFSQPKR KASITFGEID ADQNPKESKK VKKIMHREIE RQRRQEMATL YANLRSHLPL  120
EYLKQKKILF LFWLQGKRSI SDHVHQAANY IKHIQKNIEE QQKKRDELKK QHNISGSSTA  180
VVENSQCSSL MEDSVILVRP ACIGVEVAVN TPLKQGLPLS RVIDILVAEG LSIVSCNSAK  240
RNQRLLYTLE SEVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-37bHLH family protein