PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0199751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 293aa MW: 32904.9 Da PI: 6.6793

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0199751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.7	8.5e-08	242	275	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + RcHm_v2.0_Chr7g0199751 242 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275 469*****************************87 PP
2	ELK	25.5	3e-09	196	217	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ RcHm_v2.0_Chr7g0199751 196 ELKIELKQGFKSRIEDVREEIL 217 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MQDSGLGMMG SGGGGGLSGG GGGGDDHTHQ LKSEIATHPL YEQLLSAHVS CLRVATPIDQ 60 LPLIDAQLSQ SHHLLRSYAS HQQQHGHSLS PHERQELDNF LSQYLIVLCS FKEQLQQHVR 120 VHAVEAVMAC REIESTLQAL TGVSLGEGTG ATMSDDEDDM PMDFSMDQAG SDAHDMMGFG 180 LPTESERSLM ERVRQELKIE LKQGFKSRIE DVREEILRKR RAGKLPGDTT TVLKNWWQQH 240 SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK RKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	293	RKRNWHSNSQSVTSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-164	TALE family protein