PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0198881

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 434aa MW: 48707.6 Da PI: 9.4728

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0198881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	56	100	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed+llv++v+++ g +Wk Ia+ ++ gR++ qc +rwqk+l RcHm_v2.0_Chr7g0198881 56 CWTEKEDKLLVELVRKFNGSNWKQIAAGIP-GRSDVQCLHRWQKVL 100 6***************************.**********986 PP
2	Myb_DNA-binding	60	5.2e-19	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ ++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l RcHm_v2.0_Chr7g0198881 106 KGYWTKEEDDCIIKLVEKYGARRWSVIAKFLP-GRIGKQCRERWYNHL 152 689***************************.***********97 PP
3	Myb_DNA-binding	51	3.4e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l+ +++q G++ W+ Iar ++ gRt++ +k++w+ RcHm_v2.0_Chr7g0198881 158 KDAWTEEEERILAFYHQQNGNK-WAEIARFLP-GRTDNAIKNYWN 200 689*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MVKVKRELIE EAAVHSDRKF GVESWPLSEG NCDSPVSEPS PLTWRTSGPT RRSSRCWTEK 60 EDKLLVELVR KFNGSNWKQI AAGIPGRSDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL 120 VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEERILA FYHQQNGNKW 180 AEIARFLPGR TDNAIKNYWN GAFKRKEDSY SPNEWTLGRS YGSEGKSVKS QKCRTSKTGP 240 SGLINLHTTA ESDYSIVATP LGVKSGSCKQ IADHTGEYSP FPNSPLVFMD SSPSTNSNCT 300 PPKIPLRYST PTNSVQNVYA SSTSPKSRLK SLARTFKNTP SIIRKRASRT TDHANFSGAS 360 CSTALNILSL DEAAFNSRDS KSSDYVRGLS SMRHRPETSD AYKSLGRCLE HEFDDENDSG 420 IANCGKVVSA YVGV

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MVKVKRELIE EAAVHSDRKF GVESWPLSEG NCDSPVSEPS PLTWRTSGPT RRSSRCWTEK  60
EDKLLVELVR KFNGSNWKQI AAGIPGRSDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL  120
VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEERILA FYHQQNGNKW  180
AEIARFLPGR TDNAIKNYWN GAFKRKEDSY SPNEWTLGRS YGSEGKSVKS QKCRTSKTGP  240
SGLINLHTTA ESDYSIVATP LGVKSGSCKQ IADHTGEYSP FPNSPLVFMD SSPSTNSNCT  300
PPKIPLRYST PTNSVQNVYA SSTSPKSRLK SLARTFKNTP SIIRKRASRT TDHANFSGAS  360
CSTALNILSL DEAAFNSRDS KSSDYVRGLS SMRHRPETSD AYKSLGRCLE HEFDDENDSG  420
IANCGKVVSA YVGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	2e-75	MYB family protein