PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0198391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 123aa MW: 13381.3 Da PI: 6.7859 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 108.8 | 3.3e-34 | 23 | 103 | 19 | 98 |
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw + + krrtl+k d+a+a+ tdifdflv +v + RcHm_v2.0_Chr7g0198391 23 HSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIEELTRRSWATTLQGKRRTLHKDDVASAIVATDIFDFLVSMVSE 103 99**********73579***********************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence |
MRQAGKYSGF MMCGGIAGRT GPHSLPLARI KKIMKKSGED VKMISGEAPI VFSKACELFI 60 EELTRRSWAT TLQGKRRTLH KDDVASAIVA TDIFDFLVSM VSETASHSED GTVPEEEETV 120 GSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 2e-35 | NF-YC family protein |