PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0197531

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 639aa MW: 71594.7 Da PI: 5.4491

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0197531	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	440	486	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er+RR+++N++f+ L++l+P+ +K +K++iL +A+eY+k+L+ RcHm_v2.0_Chr7g0197531 440 NHVLSERKRREKLNERFSILKSLVPSI-----QKDDKVAILDEAIEYLKDLE 486 78999*******************6.....5**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MGTRLQNQER VPENLRKQLA IAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT 60 VQAIELDADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF 120 VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKS ASIQTVVCFP FMGGVIELGV 180 TELVLEDPGL IQHVKTSFLE VPYPLCLNTT NPSAGSYRND NDLTSSALDQ DVIDTKFIPI 240 VRCEEIDVTY SSNGFGPNQP AEDSFMVEGM NGAASQVQSW QYMDDELSNY VHHSMDSSDC 300 ISQTLVYPEK IVSGPKGEKV VSDHFLQDHK ECNSTKQVSL APESNDLHYQ SVLSSLLKSS 360 HQLILGPHFQ NGRQESSFVS WKKGGSVKCR KQRVGSPQYL LKKILFEVPK MHVICVLESP 420 EDNGDRNGVW RPEAGESLMN HVLSERKRRE KLNERFSILK SLVPSIQKDD KVAILDEAIE 480 YLKDLEKRVE ELETSQESTD LEATIKRKPQ DNSEKTSDSC CNDKRSNGKK PLVYKRKACD 540 IDETEPEINY VASKNSSSDN VKVSMNNKGA LIEMRFPWRE GVLLEIMDVT SSLHLDTHSV 600 ESSTTDGILF LTIQSRFKGS SIASAGTIEQ ALQRIARNC

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MGTRLQNQER VPENLRKQLA IAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELDADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF  120
VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKS ASIQTVVCFP FMGGVIELGV  180
TELVLEDPGL IQHVKTSFLE VPYPLCLNTT NPSAGSYRND NDLTSSALDQ DVIDTKFIPI  240
VRCEEIDVTY SSNGFGPNQP AEDSFMVEGM NGAASQVQSW QYMDDELSNY VHHSMDSSDC  300
ISQTLVYPEK IVSGPKGEKV VSDHFLQDHK ECNSTKQVSL APESNDLHYQ SVLSSLLKSS  360
HQLILGPHFQ NGRQESSFVS WKKGGSVKCR KQRVGSPQYL LKKILFEVPK MHVICVLESP  420
EDNGDRNGVW RPEAGESLMN HVLSERKRRE KLNERFSILK SLVPSIQKDD KVAILDEAIE  480
YLKDLEKRVE ELETSQESTD LEATIKRKPQ DNSEKTSDSC CNDKRSNGKK PLVYKRKACD  540
IDETEPEINY VASKNSSSDN VKVSMNNKGA LIEMRFPWRE GVLLEIMDVT SSLHLDTHSV  600
ESSTTDGILF LTIQSRFKGS SIASAGTIEQ ALQRIARNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	445	450	ERKRRE
2	446	451	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein