PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0196921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 669aa MW: 74191.8 Da PI: 6.8552

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0196921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.5e-09	420	457	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + RcHm_v2.0_Chr7g0196921 420 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 457 554459******************************88 PP
2	BELL	113.1	1.5e-36	282	352	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k++Ll++leeV++rYk+y++q+++v+ssFe+vag g+a++Y +lA+ka+SrhFr+Lkd i+ qi RcHm_v2.0_Chr7g0196921 282 FVELQKRKTRLLQMLEEVERRYKHYCDQMKAVVSSFETVAGTGAATVYSKLASKAMSRHFRSLKDGIVAQI 352 679******************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MARELCSEDH KSSSVGFCYS DVSSANPTIH HQNQFTNQIQ GFDQSNPAEI FNLTTGMEMI 60 GFSKGAFFSK HGGGGGGPSS SKGADHFYHP HQQEYNTTGM SETSSENQNL MESGGAWHQE 120 NSNNRFLVDD SSLRCVFPCE GNERPSQGLS LSLSSSNPSS IGLQSFELRQ TNHHQDIGSI 180 NQSHMILQDG YLGKSSGLGH QSLLHENQAA ASGLFQLRNS KYLGPAQELL NEFCSLGTKQ 240 TDALGVSKHK SNKTKQWDDQ DNNNGSTSSS SKKQSSLYSL EFVELQKRKT RLLQMLEEVE 300 RRYKHYCDQM KAVVSSFETV AGTGAATVYS KLASKAMSRH FRSLKDGIVA QIQATRKAMG 360 EKDPVAPGAS RGETPRLRIL DQTLRQQRAF QQMNMMESHP WRPQRGLPER SVSVLRAWLF 420 EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYMEE TKEHENNNNM 480 SSSDGVTTDH HGDPSTQMTR PEDQKPTQDQ LQLVRIDSEC LSSIITNNPG EKSTGHDSRS 540 GKSALQMHPQ HNFGRVTDAF GSSMELDFST YNHHHQSGGA VTYGNENPNQ SFNGGGHGVS 600 LTLGLNQHGG TNGVSLAFSP SSQSSLFYPR DHIEECQPVQ YSSLLDGEGQ NNLPYRNLMG 660 AQLLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MARELCSEDH KSSSVGFCYS DVSSANPTIH HQNQFTNQIQ GFDQSNPAEI FNLTTGMEMI  60
GFSKGAFFSK HGGGGGGPSS SKGADHFYHP HQQEYNTTGM SETSSENQNL MESGGAWHQE  120
NSNNRFLVDD SSLRCVFPCE GNERPSQGLS LSLSSSNPSS IGLQSFELRQ TNHHQDIGSI  180
NQSHMILQDG YLGKSSGLGH QSLLHENQAA ASGLFQLRNS KYLGPAQELL NEFCSLGTKQ  240
TDALGVSKHK SNKTKQWDDQ DNNNGSTSSS SKKQSSLYSL EFVELQKRKT RLLQMLEEVE  300
RRYKHYCDQM KAVVSSFETV AGTGAATVYS KLASKAMSRH FRSLKDGIVA QIQATRKAMG  360
EKDPVAPGAS RGETPRLRIL DQTLRQQRAF QQMNMMESHP WRPQRGLPER SVSVLRAWLF  420
EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYMEE TKEHENNNNM  480
SSSDGVTTDH HGDPSTQMTR PEDQKPTQDQ LQLVRIDSEC LSSIITNNPG EKSTGHDSRS  540
GKSALQMHPQ HNFGRVTDAF GSSMELDFST YNHHHQSGGA VTYGNENPNQ SFNGGGHGVS  600
LTLGLNQHGG TNGVSLAFSP SSQSSLFYPR DHIEECQPVQ YSSLLDGEGQ NNLPYRNLMG  660
AQLLHDLAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-126	TALE family protein