PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0193761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 21553 Da PI: 10.201 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 15 | 66 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksL 54 + +Er+RR +++ +L +++P+++ + +sk ++ + L +A YIk+L RcHm_v2.0_Chr7g0193761 15 KTVERNRRIHMKGLCLKLASMVPPQYykSSKSKEmMTQQSQLDLAASYIKQL 66 679*********************66687777778****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MKKCTSETSS KLDRKTVERN RRIHMKGLCL KLASMVPPQY YKSSKSKEMM TQQSQLDLAA 60 SYIKQLTERI ENLKERKEKE LKSKLGTSNK SSINNVDRPN KAVVVGSRLP VIKLTESGSS 120 IELMLISGLH KNFMFYEVIS VLEEEGAEVV SANFSTVGDK VFHTIHAQVK ISRVGVETTT 180 VWQRLQDLIY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-25 | bHLH family protein |