PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0193591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 263aa    MW: 30016.1 Da    PI: 7.3935
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0193591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151259148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g WT+eEd +l ++++ +G+g W+++ +  g++R++k+c++rw +yl
  RcHm_v2.0_Chr7g0193591 12 KGLWTAEEDRILTEYIRVHGKGKWNRVTKVTGLKRCGKSCRLRWMNYL 59
                            678*******************************************97 PP
2Myb_DNA-binding55.71.1e-1765110148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg +++eE +l+++++++lG++ W++Ia +++ gRt++q+k++w+++l
  RcHm_v2.0_Chr7g0193591  65 RGDFSEEENDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNSHL 110
                             899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEGSGRNHGY KKGLWTAEED RILTEYIRVH GKGKWNRVTK VTGLKRCGKS CRLRWMNYLS  60
PTVKRGDFSE EENDLIIRLH NLLGNRWSLI AGRVPGRTDN QVKNHWNSHL SKKLGVVNNY  120
KGVKSKAKSR SRSHSSSSTT TTSSDQQASS PKEQSNSAEL QQQPLPDSNS DDYGEAAAPA  180
RHGCDDDHDQ EMMISRDSGV GFSGMWETMM MGSNNNCDQS SFWFYNNNQD DLNLYNPNYL  240
MDPSLDHHHL HNYSFEFFED IGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.15e-64MYB family protein