PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0193451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 208aa    MW: 23080.4 Da    PI: 4.7417
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0193451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.4e-162282357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr7g0193451 22 NRWAPTPPQLRILKGLYYDkgFKYPTLEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 82
                            7****************96569*************************************97 PP
2Wus_type_Homeobox94.49.6e-312183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr7g0193451 21 NNRWAPTPPQLRILKGLYYdKGFKYPTLEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 83
                            78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MELQAQQPTE EGGNNQAAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTLEQ IQEICLHLKQ  60
YGQIEDKNVF FWFQNLKARE RQKLKEFRNV PVGGSLYLNF GSTSSTDDGR SIDLNFGSRV  120
GYGVDPYSSS PFNTNTSTTS FGTTGAQSFM EQRGGDHQEI ETLPLFPMHG EDIFGNMKTT  180
SEGGSGYGGD SRISLELSLN SYGDADMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-22WOX family protein