PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0193411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 466aa MW: 52734.2 Da PI: 6.0892 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.8e-17 | 181 | 227 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l RcHm_v2.0_Chr7g0193411 181 KGQWTIDEDRVLIQLVAQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 227 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 233 | 275 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ RcHm_v2.0_Chr7g0193411 233 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 275 679*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence |
MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ YANGSSSNPM FGVQNPCFEP YYNDNNAYTC 60 DQGSPTDVNF YECKPLNIAD NLGHGQVLDN FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP 120 LTNSQDIKPM SFVAPDEVSC INSENGYYKR AGINHKGTSR LSTIARAGST FKGRKKNNVV 180 KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE 240 DKILIQAHAE IGNKWAEIAK RLPGRTENSI KNHWNATKRR QYSKRKCRSK YPRGSLLQDY 300 IKSLNLDASP NTGRQRKNNN NNNNNNSSNS SPADHNNAST ASTKVQSQIN VGFNSESDSR 360 LVPNYEFSEE DPDFCFDENM FQEGCSIDSL LDDIPCATDF GENGNDFDGK MMVSSDHEPF 420 SVHDEKNFEV LAMQVDLGSA VMESTEVKKE LDLVEMMSQV NEADDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-105 | MYB family protein |