PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0189021
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 346aa    MW: 38633.1 Da    PI: 6.8794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0189021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08175222455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  RcHm_v2.0_Chr7g0189021 175 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 222
                             8*************************9....55599***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MAAFSYQHVL HHPFLFDSIF FPGTPTSTNS NNNHFSQSQY PSEPLVEQMN IPVESARVAE  60
SSSCIDQSST KIATFSDNEP SVTKKQSPES SAVVDKLETG EQVTQKVMTP MERKRRTRNG  120
SSPNSAQSKV KKPKKAEEEK KPKAEKKEQV KAVQEVEPPT GYIHVRARRG QATDSHSLAE  180
RVRREKISER MKMLQRLVPG CDKVTGRAVM LDEIINYVQS LQNQVEFLSM KLASVNPMFY  240
DFGPDLGDLM VKQEASPFSS GPQCSPTQPT DFADTSTNFV TTTTAATTSF TAATNNYPFL  300
DSLLLQQSQR PTAFHQDSES PLWDVEDQRQ SFLNPSGFSN NLCSFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113143RKRRTRNGSSPNSAQSKVKKPKKAEEEKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-51bHLH family protein