PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0188921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 530aa MW: 57719.5 Da PI: 6.1112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0188921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	346	388	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L RcHm_v2.0_Chr7g0188921 346 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 388 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MLPRLNGVVW MEDREDRDAG EWARTAAAAG AGNSKDEMGS LSNFKSMLEV EDEWTYMNNN 60 GIQGHSDVRD LTFSPSFADP ESLLLNQVDS SSSCSPSSSV FNNLDPSQVH YYLPQNPSLS 120 SLLNAVPNNP LDHGFDLGCE IGFLDNQGSG GGSSLMNRGG GVLTGFNDLS SNTHMQAQNL 180 CSNLQFSTTR LPHLLENGNN FSGFRGVDDT SGNALFSNRS KMLRPLQPLS SVGAQPTLFQ 240 KRAALRKNLG GLGSEGGLVL SNYEGDKGKR DMGEENEKKR KFSGGDDGED LSFDGSGLNY 300 DSDEFTENTK MDENAKNGGN SSNANSTVTG GEHKGKKKGL PAKNLMAERR RRKKLNDRLY 360 MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINNLHNELE SLPPGSALTP TASTFHPLTP 420 TPPTLPSRIK EELCPSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL LSTMRAVDNL 480 GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD VHPEHIKAVL LDSAGFHGMI

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MLPRLNGVVW MEDREDRDAG EWARTAAAAG AGNSKDEMGS LSNFKSMLEV EDEWTYMNNN  60
GIQGHSDVRD LTFSPSFADP ESLLLNQVDS SSSCSPSSSV FNNLDPSQVH YYLPQNPSLS  120
SLLNAVPNNP LDHGFDLGCE IGFLDNQGSG GGSSLMNRGG GVLTGFNDLS SNTHMQAQNL  180
CSNLQFSTTR LPHLLENGNN FSGFRGVDDT SGNALFSNRS KMLRPLQPLS SVGAQPTLFQ  240
KRAALRKNLG GLGSEGGLVL SNYEGDKGKR DMGEENEKKR KFSGGDDGED LSFDGSGLNY  300
DSDEFTENTK MDENAKNGGN SSNANSTVTG GEHKGKKKGL PAKNLMAERR RRKKLNDRLY  360
MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINNLHNELE SLPPGSALTP TASTFHPLTP  420
TPPTLPSRIK EELCPSLPSP NGQPARVEVR LREGRAVNIH MFCGRRPGLL LSTMRAVDNL  480
GLDIQQAVIS CFNGFAMDIF RAEQCKEGQD VHPEHIKAVL LDSAGFHGMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	354	KKKGLPAKNLMAERRRRKK
2	348	355	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-130	bHLH family protein