PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0187381

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 479aa MW: 52908.8 Da PI: 7.8947

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0187381	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	64.1	2e-20	187	226	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 d+ep+rC+RtDGKkWRCsr+ +++k+CErH+h+ rsr+ RcHm_v2.0_Chr7g0187381 187 DPEPWRCKRTDGKKWRCSRDIAPDQKYCERHCHKRRSRKH 226 79*********************************88764 PP
2	QLQ	45.6	2.1e-16	124	159	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q +yKy++a +PvP++L++ i++ RcHm_v2.0_Chr7g0187381 124 PFTPAQREELETQTVIYKYIMACLPVPQQLILSITN 159 8*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MKSRRNGFVE TETECCDIGL GLMMETHHQS FPCKKMNQMV TVMPHHEPQF CSGGFDGETA 60 SSNSTPLFYN TSNNNNPGIT DIYNAASSDF GSVVVPKNLQ QPYYSDSLSF SSSGGMVNVN 120 VRIPFTPAQR EELETQTVIY KYIMACLPVP QQLILSITNN PSPNGARDSS RTRGVRDMLV 180 GFSRSLDPEP WRCKRTDGKK WRCSRDIAPD QKYCERHCHK RRSRKHVESI PNLLNNKNAN 240 MLNPKPSSFK NNNQTPFSSS MVTPAAASHG QPRALDWFVN GESASVAVSN QEWEQLMPFK 300 LGLNSHTSKR DTDVDFPKQQ NESSLNLYGG GSQGLQSQRS HDYLGGALNS NQAQQTRHFI 360 DAWSTERDGN GIDELGQRKR GSVALNQKLP LSSLTLSMSG ENSEANEENG NRQMGVGVFG 420 SERQNVTWMS PLSWMSSTPG GPLAEALCLG IASSTRATTA SNGCRSSNAD VRQEFDLIN

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MKSRRNGFVE TETECCDIGL GLMMETHHQS FPCKKMNQMV TVMPHHEPQF CSGGFDGETA  60
SSNSTPLFYN TSNNNNPGIT DIYNAASSDF GSVVVPKNLQ QPYYSDSLSF SSSGGMVNVN  120
VRIPFTPAQR EELETQTVIY KYIMACLPVP QQLILSITNN PSPNGARDSS RTRGVRDMLV  180
GFSRSLDPEP WRCKRTDGKK WRCSRDIAPD QKYCERHCHK RRSRKHVESI PNLLNNKNAN  240
MLNPKPSSFK NNNQTPFSSS MVTPAAASHG QPRALDWFVN GESASVAVSN QEWEQLMPFK  300
LGLNSHTSKR DTDVDFPKQQ NESSLNLYGG GSQGLQSQRS HDYLGGALNS NQAQQTRHFI  360
DAWSTERDGN GIDELGQRKR GSVALNQKLP LSSLTLSMSG ENSEANEENG NRQMGVGVFG  420
SERQNVTWMS PLSWMSSTPG GPLAEALCLG IASSTRATTA SNGCRSSNAD VRQEFDLIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	7e-37	GRF family protein