PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0187141

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 468aa MW: 52847.5 Da PI: 7.2672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0187141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	299	344	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L RcHm_v2.0_Chr7g0187141 299 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINNL 344 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MEEINIIPSC SPPYSICQET SVNTLQQRLQ LIVQNRPEFW VYSIFWQATK DRNGGVSLSW 60 AGGHFRGIRD FSSKKLDNNY QLKFGLDLER PKKVINRQVE ALFQEDMDME RLVDINGDVT 120 DSEWFYFYTL SLTQSFAAGH GSNNILGRSF SSGAFVWLAG DQELQLYECE RVKEARMSGI 180 QTLVCIPTPY GVIELASLEV IKKDWGFVQN SKSIFGSDII TASGSVSNSK QDHVHVPQLQ 240 NSMFPRSDQK EWTTQEGGRK ENVNLSGSSS DSGPSENTSN TRLRKRGRSD KGERDSPINH 300 VEAERQRREK LNHRFYALRS VVPNVSKMDK ASLLSDAVVY INNLKTKIEE LEAKIQAQPK 360 KPKPSIMSDN TLDYSQVTSS LTYRAAAATE VDVKIVGSEA MIRVRCPDNK DYPNARLMNA 420 LKHLELQIHH ASISSVNDFM LQDVVARVPD GFTSEEAMRT AIINRFSN

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MEEINIIPSC SPPYSICQET SVNTLQQRLQ LIVQNRPEFW VYSIFWQATK DRNGGVSLSW  60
AGGHFRGIRD FSSKKLDNNY QLKFGLDLER PKKVINRQVE ALFQEDMDME RLVDINGDVT  120
DSEWFYFYTL SLTQSFAAGH GSNNILGRSF SSGAFVWLAG DQELQLYECE RVKEARMSGI  180
QTLVCIPTPY GVIELASLEV IKKDWGFVQN SKSIFGSDII TASGSVSNSK QDHVHVPQLQ  240
NSMFPRSDQK EWTTQEGGRK ENVNLSGSSS DSGPSENTSN TRLRKRGRSD KGERDSPINH  300
VEAERQRREK LNHRFYALRS VVPNVSKMDK ASLLSDAVVY INNLKTKIEE LEAKIQAQPK  360
KPKPSIMSDN TLDYSQVTSS LTYRAAAATE VDVKIVGSEA MIRVRCPDNK DYPNARLMNA  420
LKHLELQIHH ASISSVNDFM LQDVVARVPD GFTSEEAMRT AIINRFSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	289	LRKRGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-62	bHLH family protein