PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0186471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Dof
Protein Properties Length: 300aa    MW: 32619.9 Da    PI: 8.784
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0186471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3941102263
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                             ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  RcHm_v2.0_Chr7g0186471  41 KESALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 102
                             67899*****************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDTAQWPQGI VVKPIEEIVT NTCPKPSSAN NLERKLARPQ KESALNCPRC NSTNTKFCYY  60
NNYSLTQPRY FCKTCRRYWT EGGSLRNIPV GGGSRKNKRS SSSSSSTTTS NISNNSSKRL  120
PDLIQPQGNQ GNQGQDLNLG FPSNQVFAQH QIPNIDQNSD KNNNSSSTTT TASHLSALEL  180
LTGLTSRGLN SFMPMPVPNS DPNSSNNSAS VYTSGFPMSE LMIKPTLNFS LDGLGSGYGS  240
ALQGHHVQEN SGRLLFPFED LKQVSGSGSG IDHHQQNNKE HHHGGDSTGY WTGMLGGGTW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.18e-48Dof family protein