PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0184661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 301aa    MW: 32522.2 Da    PI: 8.2045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0184661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10351347
                            SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                            +WT eEd+ + +a++++  +     +W++Ia+ ++  ++ +++k ++q++
  RcHm_v2.0_Chr7g0184661  3 SWTREEDKAFENAIALHWIEddeesSWDKIASLVP-SKSMEELKRHYQML 51
                            7*****************99***************.************86 PP
2Myb_DNA-binding38.92e-12133177347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  RcHm_v2.0_Chr7g0184661 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 177
                             7*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MSSWTREEDK AFENAIALHW IEDDEESSWD KIASLVPSKS MEELKRHYQM LVEDVSAIVS  60
GNIPVPNYGG EEATTSVSKE SSSARASSSG VSDKRLSSGH GNGGGFSPLG HDSSGHGSKG  120
GSRSDQERKK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN NGGDVPSHQA PITGQQSNAY APSAAAIGPP SVKHRPHQPH  240
MAGLGMYGAP MGHPVSAPPG HMASAVGTPV MLPPGHHPHH AHPPPYVVPV AYPMAHPTMH  300
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-76MYB family protein