PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0183781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 566aa MW: 62248.2 Da PI: 7.3956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0183781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.3	2.7e-18	263	312	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI++Lq RcHm_v2.0_Chr7g0183781 263 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 312 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MELPQPRPFG GEGGRKPTHD FLSLYTSHST AQQDPIPPSQ GGYLETHDFL QPLERMGMGK 60 TCAKEETSVE IISPSRSSVE KPPTSVEHIL PGGIGTYSIS HISYFNQRVP KPEENVFPVA 120 PQASSTHERN DENSNCSSYA GSGFTLWDES AAMKGKTGKE NVVERPGLRG QWTSSERPSQ 180 SSSTNNRNCF SSQSSGQKNL SFMEMMKSAA KGCTQEEELD DEEEFALKKE MSTTTTTATT 240 PYNGELRVKV DVKSSDQKAN TPRSKHSATE QRRRSKINDR FQMLRELIPH SDQKRDKASF 300 LLEVIEYIQY LQEKVTKYEA PYQGWNHDPA KLMPWGNNKL GESYCDQSRS MNGGSGPALV 360 FAASKFEEKT TSVSPTIPGS AQNLVESDTS TETTFRAKDY PNGITNKANP FPLSMQSNFS 420 TPVRSGSATP HLPPRLPSDA ENTSSHPRSM LFPTKSCTAE AGAISDKLKE HELTIEGGRI 480 NISSAYSQGL LNTLTQALQN SGVDLSQASI SVQIELGKQA CSRTAIPKSI VKENEIPSMT 540 PGKKHPRISV GEDSEQAQKK LRTGRH

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MELPQPRPFG GEGGRKPTHD FLSLYTSHST AQQDPIPPSQ GGYLETHDFL QPLERMGMGK  60
TCAKEETSVE IISPSRSSVE KPPTSVEHIL PGGIGTYSIS HISYFNQRVP KPEENVFPVA  120
PQASSTHERN DENSNCSSYA GSGFTLWDES AAMKGKTGKE NVVERPGLRG QWTSSERPSQ  180
SSSTNNRNCF SSQSSGQKNL SFMEMMKSAA KGCTQEEELD DEEEFALKKE MSTTTTTATT  240
PYNGELRVKV DVKSSDQKAN TPRSKHSATE QRRRSKINDR FQMLRELIPH SDQKRDKASF  300
LLEVIEYIQY LQEKVTKYEA PYQGWNHDPA KLMPWGNNKL GESYCDQSRS MNGGSGPALV  360
FAASKFEEKT TSVSPTIPGS AQNLVESDTS TETTFRAKDY PNGITNKANP FPLSMQSNFS  420
TPVRSGSATP HLPPRLPSDA ENTSSHPRSM LFPTKSCTAE AGAISDKLKE HELTIEGGRI  480
NISSAYSQGL LNTLTQALQN SGVDLSQASI SVQIELGKQA CSRTAIPKSI VKENEIPSMT  540
PGKKHPRISV GEDSEQAQKK LRTGRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-121	bHLH family protein