PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0181801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 319aa MW: 35479 Da PI: 9.4192

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0181801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.7e-18	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l ++q+G g+W++ +++ g+ R++k+c++rw++yl RcHm_v2.0_Chr7g0181801 19 RGPWTPQEDKKLFAFIQQHGHGSWRSLPKKAGLQRCGKSCRLRWRNYL 66 89*********************************************7 PP
2	Myb_DNA-binding	51.7	2.1e-16	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l RcHm_v2.0_Chr7g0181801 72 RGNFSLQEDQTIIQLHALLGNR-WSAIAANLP-RRTDNEIKNYWNTHL 117 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MGKSRTLTNS TATTSEIKRG PWTPQEDKKL FAFIQQHGHG SWRSLPKKAG LQRCGKSCRL 60 RWRNYLNPAI KRGNFSLQED QTIIQLHALL GNRWSAIAAN LPRRTDNEIK NYWNTHLKKR 120 LAKTGFDPVT HKPKTAILAS ANGDPKNLSN LSHIAQWESA RLQAEARFVR QSKLIKPAPP 180 APQCLDFNLR TWETLMMSKS LAAGGGGGDE AGGDGRATNV VQEVGSFCNF DGVLGNNGRQ 240 FEVPKLTIPA APDFNEVSEE SGTDEYGDLF EALLLQQSYT NTGFDVVDAW TLEQCNDISA 300 DHYQNVIMSG GLKNLFMFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	7e-88	MYB family protein