PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0181361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 354aa MW: 39526.7 Da PI: 7.2528

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0181361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl RcHm_v2.0_Chr7g0181361 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.2	2.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l RcHm_v2.0_Chr7g0181361 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKLQ 120 TGTAEDGISG NSQQPISKGQ WERRLQTDIH MAKQALCEAL SLDKPSHDHH HVPDLKPSLS 180 NINGTTSTTT RPHQASTYAS NTENIARLLE NWMKSSPKVR TNSSDDHQTQ IHHQNMLNNG 240 SSSSTTDGAH SGTTTTPDHH EHHGFDSLFS SFNSSTLSDN ASTHLSAENN HRQTSTTTNN 300 NNTGLMMFQD ESKPDLEAAA GAAAAVDQVP LTLLEKWLFD DATAHQAHDQ DMLF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKLQ  120
TGTAEDGISG NSQQPISKGQ WERRLQTDIH MAKQALCEAL SLDKPSHDHH HVPDLKPSLS  180
NINGTTSTTT RPHQASTYAS NTENIARLLE NWMKSSPKVR TNSSDDHQTQ IHHQNMLNNG  240
SSSSTTDGAH SGTTTTPDHH EHHGFDSLFS SFNSSTLSDN ASTHLSAENN HRQTSTTTNN  300
NNTGLMMFQD ESKPDLEAAA GAAAAVDQVP LTLLEKWLFD DATAHQAHDQ DMLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-110	MYB family protein