PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0181001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27745.2 Da PI: 6.5145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.1e-05 | 35 | 84 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + rE++ R+++N+ f L + l + ++ Ka+iL +A++ +k+L RcHm_v2.0_Chr7g0181001 35 KRIHKAVREKQKREHLNDLFLDLSDALELN----QQNTGKATILCEATRLLKDL 84 6888899********************998....68899*********999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGSKDPAPVV DKVNEATQPV DRVCPGKKIQ GKMPKRIHKA VREKQKREHL NDLFLDLSDA 60 LELNQQNTGK ATILCEATRL LKDLLGQIES LRNENVSLLS ESNYMTVEKN ELREDTSALE 120 TQIERLQSEL QERVRQSKPD LNVPPVEVRQ EVASHFPGNC VGFPAQESGL QQAPAVFVMP 180 LHPDLQTYPP ADSAHLTSKI NSNVSKPHPR YPTSVDSWPF QLLSEQPAAG KDSRQNGHST 240 SGYNGHDNM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.2 | 2e-69 | bHLH family protein |