PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0180941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 91aa    MW: 10326.7 Da    PI: 5.6364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0180941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-1014541454
                            HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            d+i++ + +L+ llP++ + p++K s ++iLe+++ YIk L
  RcHm_v2.0_Chr7g0180941 14 DEIKELILKLQALLPQLNHRPNTKASASTILEETCSYIKRL 54
                            689*************889********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MSGRTTRASQ PTEDEIKELI LKLQALLPQL NHRPNTKASA STILEETCSY IKRLHKEVGD  60
LSQRLSQLLH DSAEFVEVDE ELITRLLSNI N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.16e-13bHLH family protein