PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0180191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 176aa    MW: 19417.7 Da    PI: 7.0293
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0180191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-183090257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+++t++q+++L+e++e+  ++p+ e+ e+++ +l    +++ ++V++WFqN++ +e++
  RcHm_v2.0_Chr7g0180191 30 STRWAPTTDQIRILKEFYENgGKNPTPEQVERITLQLkqygQVENKNVFYWFQNHKSRERQ 90
                            58*****************99**************************************97 PP
2Wus_type_Homeobox105.92.6e-342992265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW+Pt++Qi+iL+e y++G ++P+ e+++rit +L++yG++e+kNVfyWFQN+k+Rerqk+
  RcHm_v2.0_Chr7g0180191 29 SSTRWAPTTDQIRILKEFYENGGKNPTPEQVERITLQLKQYGQVENKNVFYWFQNHKSRERQKK 92
                            689***********************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MEPQAQQPTE DGGSNKAAGS SSTMHCRRSS TRWAPTTDQI RILKEFYENG GKNPTPEQVE  60
RITLQLKQYG QVENKNVFYW FQNHKSRERQ KKKLTSDVHV PMQVSGLVGG SINLNFGSTC  120
SAGVDGSINL NFGLTCPAGV GGSIMEQRGE DHQEIETLPL FPMHGEEICG NMKTTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-29WOX family protein