PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0180151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 368aa MW: 40707.7 Da PI: 5.4405

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0180151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.2	3.9e-13	16	64	1	48
TSSS-HHHH.HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEd.ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l++ v + G g+W++++++ g++R++k+ck rw +yl RcHm_v2.0_Chr7g0180151 16 KGTWTEEEDaNILAHHVSKNGIGNWTSVPKKAGLNRCGKSCKPRWSNYL 64 799***94578999*****************************97 PP
2	Myb_DNA-binding	40.7	5.3e-13	72	113	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E+el+v++++ G++ W Ia+ ++ gRt++++k +w++ RcHm_v2.0_Chr7g0180151 72 TFTPQEEELIVRLHATIGSR-WPIIAQQLP-GRTDNDVKTYWNT 113 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRPPASCDK LINVKKGTWT EEEDANILAH HVSKNGIGNW TSVPKKAGLN RCGKSCKPRW 60 SNYLRANLKH ETFTPQEEEL IVRLHATIGS RWPIIAQQLP GRTDNDVKTY WNTKLKKKLS 120 DMGIDPVTHK PFSQILADYG NIGGLPKSGM RIGIGASLNK DLKNAMLMKS SEPYTSGLSN 180 FNNSHLVPTT KIEPMQATSS TKLYNYQPYD LLTQLQAMKY VTEVSNSTTN TNPAPSPVNF 240 YSEGSLSSSS SSTSSSAAVQ EKSPLAFGWS DFLLEDAFVP TEDARGAMPQ GEIWDQATMQ 300 DNMAESSSKD MFHQAQTENV GMSYGMSSNQ VEAIADPCDS SFVEAMVAKE NDLFLEFPEL 360 LLEEPFYY

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRPPASCDK LINVKKGTWT EEEDANILAH HVSKNGIGNW TSVPKKAGLN RCGKSCKPRW  60
SNYLRANLKH ETFTPQEEEL IVRLHATIGS RWPIIAQQLP GRTDNDVKTY WNTKLKKKLS  120
DMGIDPVTHK PFSQILADYG NIGGLPKSGM RIGIGASLNK DLKNAMLMKS SEPYTSGLSN  180
FNNSHLVPTT KIEPMQATSS TKLYNYQPYD LLTQLQAMKY VTEVSNSTTN TNPAPSPVNF  240
YSEGSLSSSS SSTSSSAAVQ EKSPLAFGWS DFLLEDAFVP TEDARGAMPQ GEIWDQATMQ  300
DNMAESSSKD MFHQAQTENV GMSYGMSSNQ VEAIADPCDS SFVEAMVAKE NDLFLEFPEL  360
LLEEPFYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-63	MYB family protein