PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0180121
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 271aa    MW: 29236.3 Da    PI: 5.7981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0180121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-11156203455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  RcHm_v2.0_Chr7g0180121 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203
                             8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MDPPLINEAS FSAANPAAYS LAEIWPFGGE PGRLGLRMGS LGGGLGESSG NRDGSLEEST  60
VTEQSGGGGG RKRKDVSSED ESSKMVSTSS ANGLKNSSGK RMKLEGSRNE NGNSKAEVET  120
SSGADDKPEE QSTKPSEPAK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP  180
GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS LKLESVNSRV NMNPTIEAFP SKDQFDAATL  240
LFGSHTAREY GQGSQAEWLH MQVGGSFERT A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-84bHLH family protein