PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr7g0179981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 32831.5 Da PI: 9.1831 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 94 | 138 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky RcHm_v2.0_Chr7g0179981 94 PWTEDEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 138 8*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence |
MSSGTCSTTV DPAAGAAKEF MLFGVRVVVD SMRKSVSLNN LSQYEQPTEA SNNNNNSSGA 60 GAGKEDAVAG YVSENDVVHN SGGNRERERK RGVPWTEDEH KLFLLGLQKV GKGDWRGISR 120 NYVKTRTPTQ VASHAQKYFL RRSNHNRRRR RSSLFDITTD SVPATPMEEE QVHHQDNTSH 180 LHSLPPPPPQ SESCNPNGFS MVPIFPMNVG PAVVQVATKK PTGNLKLGQG NPGCPSPKIV 240 HPVALHSAPH ATEASDLNLN ATIDTSPLAL NLSLSMNSRE SSSRHSAFQA MSSFGNGDNI 300 ISVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74840.2 | 2e-56 | MYB_related family protein |