PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0177511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 417aa MW: 45811 Da PI: 7.1576

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0177511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ RcHm_v2.0_Chr7g0177511 60 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 104 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MALVEDQSEA TGSNASVAAG NCSSKGDAQS KLVTELKDIS SFGNDQALKV RKPYTITKQR 60 EKWTEEEHQK FLEALKLYGR GWRQIEEHVG TKTAVQIRSH AQKFFSKVAK ESTGNGEGSL 120 KPIEIPPPRP KRKPMHPYPR KLNGSPERRS PSPNFSVAEK GQESPTSVLS VPGSDVIGSA 180 ALDQYNRSPP STSCTTDMRS TNLSHVEKEN DYATSNSSLE EAKESMPPAD STLDEPLSMK 240 DESASKYTST TEGDAATVGG STSIKLFGRT VLVSDLHKQS PPDTKDCTLS ISMAKRENYE 300 IECGKAEHQN ESPKSVQANP DAPHPLPWWV NLPFCQVIRV DSRVDEQLKE KERSCAGSND 360 GSVSSIDSLC EEARSVVPCN SRKGFVPYKR CLADTNRNSS VIVSEEMRDR QRARVCS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MALVEDQSEA TGSNASVAAG NCSSKGDAQS KLVTELKDIS SFGNDQALKV RKPYTITKQR  60
EKWTEEEHQK FLEALKLYGR GWRQIEEHVG TKTAVQIRSH AQKFFSKVAK ESTGNGEGSL  120
KPIEIPPPRP KRKPMHPYPR KLNGSPERRS PSPNFSVAEK GQESPTSVLS VPGSDVIGSA  180
ALDQYNRSPP STSCTTDMRS TNLSHVEKEN DYATSNSSLE EAKESMPPAD STLDEPLSMK  240
DESASKYTST TEGDAATVGG STSIKLFGRT VLVSDLHKQS PPDTKDCTLS ISMAKRENYE  300
IECGKAEHQN ESPKSVQANP DAPHPLPWWV NLPFCQVIRV DSRVDEQLKE KERSCAGSND  360
GSVSSIDSLC EEARSVVPCN SRKGFVPYKR CLADTNRNSS VIVSEEMRDR QRARVCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	7e-61	MYB_related family protein