PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 24180.8 Da PI: 4.9488 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311851 56 KGNITEEEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 100 6899******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MRSSTYYDKN DGLKKGAWAA SEDQIVKAYV EKHGLKRCGK SVRLRWLNYL RPDIIKGNIT 60 EEEEELIIRL HKLLGNRWSL IAGRIPGRTD NEIKNYWNST LKRKLQQENH LEVSKDEEIK 120 EDLSSSVVVA AATDEDVSRL TKNNVIEDEV NHRQHHDADV GVGVAAEATN NKGTGDDEYL 180 RDDLWRNNFI MDFNDTQFDV SELQNDIPEI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-35 | MYB family protein |