PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24872.5 Da PI: 4.9636 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed++ + +vk++G g W + +r+ g++R++k++++rw++yl RcHm_v2.0_Chr6g0311841 16 KGAWAASEDQIVKAYVKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311841 69 KGNITEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 113 6899******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MGRSSTYYDK NDGLKKGAWA ASEDQIVKAY VKKHGVGKWG KLSRETGLKR CGKSVRLRWL 60 NYLRPDIIKG NITEDEEELI IRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSTLKRKLEE 120 ENHLEVSKDE EIKEGFTSSA ADEDDPHLTK DNVIEDEDHH RQPHDVDVGV GVGATNNNGT 180 GDDEYLRDDL WWNNFIMDFN ATQLDISEFQ TDFPEI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-52 | MYB family protein |