PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33918.1 Da PI: 8.3615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+d+++ +G g W++I+++ g++R++k+c++rw++yl RcHm_v2.0_Chr6g0311711 14 RGAWTAIEDQVLIDYINTHGEGKWRRIPKEAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311711 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 7999******************.*********.************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MGRSPCCVNE GLNRGAWTAI EDQVLIDYIN THGEGKWRRI PKEAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKVNNGQ 120 DDVHQVHLTV ENKNTKKKKK KKYKTKSLTT VLDSIAAIRT RAVRCNRVVV TSHLVPHPFV 180 KNVHGTALEE GINNSEEDNT ITTATATTTS PSENLVLEFD VGKLFNVSEN IPDSSDDYWE 240 LYQFGGGDKV LEDQYGGNIN NGGGSSNNYK WSSASSEPIL FSEEMLKDWM REDCFHHQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-61 | MYB family protein |