PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0311701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 282aa    MW: 32194 Da    PI: 4.9529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0311701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd+ l+d +k +G   W++I++  g++R++k+c++rw++yl
  RcHm_v2.0_Chr6g0311701 14 KGPWTAEEDKMLADHIKAHGEQKWSSIPKQTGLKRCGKSCRLRWLNYL 61
                            79********************************************97 PP
2Myb_DNA-binding53.17.2e-1767111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +
  RcHm_v2.0_Chr6g0311701  67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNGH 111
                             7999******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MRRIPCCSKE GVNKGPWTAE EDKMLADHIK AHGEQKWSSI PKQTGLKRCG KSCRLRWLNY  60
LRPNIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNG HLCKKSQLEK  120
SKVAAKNMRP SDEAKVEEDH RHDSKVESES SEGSLFSHSS TTSTTTEEDS SDILMDFYTR  180
EITLSEFLDT DFTKFSSMIS TDKVLMVQGE GEDQIQKQPQ VSSSQAEAEA NDEAPMNVII  240
SQEMMDNLIV WEYQSDSDFG FKLSAAFTDS VADEERILDF MN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-60MYB family protein