PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 30749.6 Da PI: 6.5169 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.4e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l ++k +G g W+ +++ g++R++k+c++rw++yl RcHm_v2.0_Chr6g0311681 14 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311681 67 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 6777889***************.*********.************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence |
MGRSPCCSKE GLNRGAWTAL EDKVLTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SGDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLVKKAKPES 120 HSGSSKETSP APTKFRPRTP SATATQPQVI RTKATRLTRM LVPSLPLLID DYSTTTSPLD 180 LRVPQTQSVS SLPEDAANTE VHIQGTDAMN FGCNGFQAAA GEDEDAMGGY DIPLDDGMLN 240 DWTGNDNCDL EKYGASLDLD SLAFLLDSDD WLGQENSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 7e-63 | MYB family protein |