PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 559aa MW: 62297.7 Da PI: 6.2887

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.1	1.4e-08	490	528	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + RcHm_v2.0_Chr6g0310681 490 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 528 6887779******************************88 PP
2	BELL	78.3	1.1e-25	363	430	1	69
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 +rqe++ kkakLl ll+++d+ Y+q+v++++tv+s+F+a++ ++ +++++Alk+iSr +++L+++i+ RcHm_v2.0_Chr6g0310681 363 QRQEIETKKAKLLALLQMLDDCYNQCVDEIHTVVSAFHAATNTDP-SVHARFALKTISRFYKNLRERIS 430 699****************************************.9******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MMDNQMFNVP TDVTARNSVV VDGIGPHTTM NSFLRSYSLD VNHQNHFISV LPMLPAIDGD 60 SVIGCHSDHL HDTNSAAIAE SHAFVTSQRR NNMGEPPFGS ASFYDHSVFQ GIPNPAASCS 120 TVFAPSGNLQ EDLDNLAISA TPMHSSEIYV SNACSSIPSS LLATPVNYGY DEILGSINSQ 180 QWELNKYAAA PSDPKEKTPV RTTGLQPYSP SIGNLNPNGW SSPNGASYEM TYHSYSSPKS 240 SNELSLTLAT SRPSIINGMN IRDQCSDIEC SGIVQPCLNQ TRFGSDQPAS CSSEEPSPSF 300 GSCKPPQLSQ IICGSSYFHV IQEILAQIAS YSLENLDESS YSSVGVNSAL DSRFEVQNEP 360 ARQRQEIETK KAKLLALLQM LDDCYNQCVD EIHTVVSAFH AATNTDPSVH ARFALKTISR 420 FYKNLRERIS TYCLAMSENF NPESPSESET SYDEIQKQLA LQHMKKKEHQ IWRPQRGLPE 480 KSVSVLRAWM FQNFLHPYPK DAEKHLLAVK SGLTRSQVSN WFINARVRLW KPMIEEMYAD 540 MNRRKARQNE NTEKIPHKY

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MMDNQMFNVP TDVTARNSVV VDGIGPHTTM NSFLRSYSLD VNHQNHFISV LPMLPAIDGD  60
SVIGCHSDHL HDTNSAAIAE SHAFVTSQRR NNMGEPPFGS ASFYDHSVFQ GIPNPAASCS  120
TVFAPSGNLQ EDLDNLAISA TPMHSSEIYV SNACSSIPSS LLATPVNYGY DEILGSINSQ  180
QWELNKYAAA PSDPKEKTPV RTTGLQPYSP SIGNLNPNGW SSPNGASYEM TYHSYSSPKS  240
SNELSLTLAT SRPSIINGMN IRDQCSDIEC SGIVQPCLNQ TRFGSDQPAS CSSEEPSPSF  300
GSCKPPQLSQ IICGSSYFHV IQEILAQIAS YSLENLDESS YSSVGVNSAL DSRFEVQNEP  360
ARQRQEIETK KAKLLALLQM LDDCYNQCVD EIHTVVSAFH AATNTDPSVH ARFALKTISR  420
FYKNLRERIS TYCLAMSENF NPESPSESET SYDEIQKQLA LQHMKKKEHQ IWRPQRGLPE  480
KSVSVLRAWM FQNFLHPYPK DAEKHLLAVK SGLTRSQVSN WFINARVRLW KPMIEEMYAD  540
MNRRKARQNE NTEKIPHKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	2e-93	TALE family protein