PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310301

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 394aa MW: 44808.6 Da PI: 6.551

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310301	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	321	355	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ RcHm_v2.0_Chr6g0310301 321 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 355 669*****************************885 PP
2	ELK	37.8	4.1e-13	275	296	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s RcHm_v2.0_Chr6g0310301 275 ELKNHLLRKYSGYLSSLKQELS 296 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEEYNNSNEM DHENQGTPRG NFLYASPNLG GNYGRAAAAA AGDHNQQINT FHLQSSGGEC 60 FPSTQPTVKT EAAGSTSQHA HHHHHKFHHP QFPPPSLILS RGHNDQIPVQ QQQHIENENE 120 VEAIKAKIIA HPHYSNLLQA YMDCQRVGAP SEVVARLSAA RQEFEARQRS SVSSRDASSK 180 DPELDQFMEA YYDMLVKYRE ELTRPIQEAM DFMRKIETQL NMLGNNSNTT PLRIFSASAL 240 EDKCDGNGSS EEDQDNNSGG ETEVAEIDPR AEDRELKNHL LRKYSGYLSS LKQELSKKKK 300 KGKLPKDARQ KLLSWWELHY KWPYPSESEK VALAESTGLD QKQINNWFIN QRKRHWKPSE 360 DMQFMVMDGL HPQNAAALYM DGHYIGDGHY RLGP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEEYNNSNEM DHENQGTPRG NFLYASPNLG GNYGRAAAAA AGDHNQQINT FHLQSSGGEC  60
FPSTQPTVKT EAAGSTSQHA HHHHHKFHHP QFPPPSLILS RGHNDQIPVQ QQQHIENENE  120
VEAIKAKIIA HPHYSNLLQA YMDCQRVGAP SEVVARLSAA RQEFEARQRS SVSSRDASSK  180
DPELDQFMEA YYDMLVKYRE ELTRPIQEAM DFMRKIETQL NMLGNNSNTT PLRIFSASAL  240
EDKCDGNGSS EEDQDNNSGG ETEVAEIDPR AEDRELKNHL LRKYSGYLSS LKQELSKKKK  300
KGKLPKDARQ KLLSWWELHY KWPYPSESEK VALAESTGLD QKQINNWFIN QRKRHWKPSE  360
DMQFMVMDGL HPQNAAALYM DGHYIGDGHY RLGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-136	TALE family protein