PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310231

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 414aa MW: 45792.2 Da PI: 6.9478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310231	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl RcHm_v2.0_Chr6g0310231 14 RGPWSPEEDSKLKSYIELHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	37.7	4.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd l+ + G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr6g0310231 69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE LHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRKEHQAAAR RSAAGLKQQE IVKRGLIISS SSGNNNSMVN PVAAASQNPY WPELPVLQVP 180 SIPNYSSPNQ EVVVPSFNDH ASIRKLLIKL GGRFHSDHHD NVAQPNIQDV YSSNGDIQLP 240 VDQFPSSTQQ IYHEESEANM HSSASLIAAL ASNNISNPGQ FAQMNHYNNP ADNAGYGGAV 300 NMFQGGQSSN YFLSNELKDM VYNIDPEKLD GLEFLYSEDV MIMMNDRPIS STTNTSTSYG 360 DQSTIGWSGD QMQLVYPPPL AASGSDYHEA MQRMIMPQDQ CANLSGSYPG DGVQ

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE LHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRKEHQAAAR RSAAGLKQQE IVKRGLIISS SSGNNNSMVN PVAAASQNPY WPELPVLQVP  180
SIPNYSSPNQ EVVVPSFNDH ASIRKLLIKL GGRFHSDHHD NVAQPNIQDV YSSNGDIQLP  240
VDQFPSSTQQ IYHEESEANM HSSASLIAAL ASNNISNPGQ FAQMNHYNNP ADNAGYGGAV  300
NMFQGGQSSN YFLSNELKDM VYNIDPEKLD GLEFLYSEDV MIMMNDRPIS STTNTSTSYG  360
DQSTIGWSGD QMQLVYPPPL AASGSDYHEA MQRMIMPQDQ CANLSGSYPG DGVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-79	MYB family protein