PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310051

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 573aa MW: 62251.2 Da PI: 9.0133

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310051	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.9	4.2e-24	205	249	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e RcHm_v2.0_Chr6g0310051 205 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHINRGRHRSRKPVEG 249 79****************************************985 PP
2	QLQ	62.6	1e-21	138	174	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k RcHm_v2.0_Chr6g0310051 138 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 174 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence
MDFGVVGLEG FGGSDIGFGS DQEAKNRRYG SGFQKQERSG TVDEEHWRSS KQVKSSDDFS 60 APKKMLQLNT GMMRTNSTNF DGQQLLSFSS SSKLEAQNAS LPSYFQQAVS AYHRNSGNNH 120 SGSLNGATVH WTIAGGRGPF TPSQWMELEH QALIYKYITA NVPIPSNLLI PIKKALDSAG 180 LFSPGLRSNT LGWGSIHLGY SNSTDPEPGR CRRTDGKKWR CWRDAVPDQK YCERHINRGR 240 HRSRKPVEGQ TGQSVTGTAT PTPTASKQLM PGGGGTSNLA IANQQLKSLQ PAAAASNSSA 300 PTQMSRMFMN KDSASERMQH SPNLSMLSKE NTFLNQKQQL GLEESSRSEF GLVTSDALLN 360 PSQKRSSSSM MSCGNFGAVQ ETDSQHSLRH FIDDWPKNPS DRPAVVAWPD QLDIQTDRTQ 420 LSISIPKTGS SDFIPSTSST NNGKLTFSPL RMSHELNSVP MGLGVSSCME QHKKQANWIP 480 ITWEPSVGGP LGEVLHHTNI NAAECKKSSV LNLMTEGWDN NSPPSLGSSP TGVLQRTAFG 540 SVSSSAGSSP RAENRSTHEG ASHCNELLMF PAL

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence

MDFGVVGLEG FGGSDIGFGS DQEAKNRRYG SGFQKQERSG TVDEEHWRSS KQVKSSDDFS  60
APKKMLQLNT GMMRTNSTNF DGQQLLSFSS SSKLEAQNAS LPSYFQQAVS AYHRNSGNNH  120
SGSLNGATVH WTIAGGRGPF TPSQWMELEH QALIYKYITA NVPIPSNLLI PIKKALDSAG  180
LFSPGLRSNT LGWGSIHLGY SNSTDPEPGR CRRTDGKKWR CWRDAVPDQK YCERHINRGR  240
HRSRKPVEGQ TGQSVTGTAT PTPTASKQLM PGGGGTSNLA IANQQLKSLQ PAAAASNSSA  300
PTQMSRMFMN KDSASERMQH SPNLSMLSKE NTFLNQKQQL GLEESSRSEF GLVTSDALLN  360
PSQKRSSSSM MSCGNFGAVQ ETDSQHSLRH FIDDWPKNPS DRPAVVAWPD QLDIQTDRTQ  420
LSISIPKTGS SDFIPSTSST NNGKLTFSPL RMSHELNSVP MGLGVSSCME QHKKQANWIP  480
ITWEPSVGGP LGEVLHHTNI NAAECKKSSV LNLMTEGWDN NSPPSLGSSP TGVLQRTAFG  540
SVSSSAGSSP RAENRSTHEG ASHCNELLMF PAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-84	GRF family protein