PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0309431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 378aa    MW: 41894 Da    PI: 4.8202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0309431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-103033431055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  RcHm_v2.0_Chr6g0309431 303 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 343
                             9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MESLGVFAEG DQWECFSRLF SNEDQELDFT PHFLGQEGSF PFQHNEGFNF ETPTTLFPNP  60
EAGDEMGLNR FNQSFFHSLD SLSSNMHYLP QENNSGYSAS SGIFTAILNP ENYYFGGNSC  120
HTPMSNDIST SVDVSMTGNT ESNFGSFIPS FSDIGMEGAV CNTEYSGSGR MGFSDDSQPP  180
KELQLKRMHD AAAEKSNTKD ASESNPKKKP RLSKDKTKKS NARSKKGQKA NSDLKVKDED  240
ESNTGVDRQS SSSYNSSEDD NASQETNGAG EISDPKSSSA LNLNGKTRAN RGSATDPQSL  300
YARKRRERIN ERLRVLQNLV PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDMWMYAPI  360
AYNGMDIGLD LHKMSPLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-48bHLH family protein