PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 333aa    MW: 36036.2 Da    PI: 6.104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16139185455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  RcHm_v2.0_Chr6g0308251 139 VHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 185
                             6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MADLYGTPPD SEEISNILSH LLHGGSSSSC GAPFKPASYM HLLNSSSSVP PPHEHPQLLA  60
RSADRPDSDR PSDFNFSDSG GGYFMDSDAN TSKKGGRRVS SENDLGDVSC DSEGPEAPEV  120
PLNAAPPRSL SKRSRAAEVH NLSEKRRRSK INEKMKALQN LIPNSNKTDK ASMLDEAIEY  180
LKQLQLQVQM LTMRNGLGLH PMCLPGMMQP VQLPHMALGF DEGSNKVPKS SRGMSPFFGS  240
EENSMQSAYN ISSGCTILNQ PMVVPSAANV PTLEASFVFE PSTQAYYRPF FAATSSKELL  300
FCEGEPSSKS DSNRTGINSS SDADKVSSKR PDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-43bHLH family protein