PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0308101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 28028.7 Da PI: 8.6996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 141 | 181 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L RcHm_v2.0_Chr6g0308101 141 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 181 699*****************87.....8****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MDINQLKSEE QMEMMMMMQM DKISELCGAY NDVVSDLPSS EHFPGSATSM PQYCHDQNPH 60 NVSSPPPSFL NLSPSTISFT NSLEQSPQPQ LASDKRASMA AMREMIFRIA SMQPIHIDPE 120 SVKPPKRRNV KISKDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIHYVKF 180 LKSQVQTLER AAVNNNNNNN NNNNRVPQTG IGFPVAMSSG SNYLSNSMAK AYQAHPPQHH 240 QNVRHFEDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50330.1 | 3e-43 | bHLH family protein |