PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0307581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25970 Da PI: 10.1121 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 135 | 223 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +k++++s+v+ +l l +f++++ +kk + +tl de+g+++e + rk++ l++GWk+F+ a++L +gD vvF+l++ RcHm_v2.0_Chr6g0307581 135 VKTMLQSHVTGGFWLGLQVQFCKDYLSKK--DEIMTLVDEDGNEYETIYLARKTG----LSGGWKGFAVAHDLVDGDAVVFQLIK-- 213 699**********************6664..4479**************656665....***********************987.. PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++++v ++r RcHm_v2.0_Chr6g0307581 214 PTTMKVYIIR 223 6777998887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MAKPKTVSYE ESRKQRLEEN RKRMEALNLP QLSLALKTSS SPKSSPMKRT PKPKAEKQMV 60 VVRRSSRVAN LPSPPVYKEM EVVERVMIPR RYSGSTSKHR DLSNRVYASY EDRMDAMAKA 120 EKLESDLGSD YPTLVKTMLQ SHVTGGFWLG LQVQFCKDYL SKKDEIMTLV DEDGNEYETI 180 YLARKTGLSG GWKGFAVAHD LVDGDAVVFQ LIKPTTMKVY IIRVERKA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-71 | B3 family protein |