PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0307001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27857.8 Da PI: 8.5008 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.9e-18 | 37 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + RcHm_v2.0_Chr6g0307001 37 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 91 | 133 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ RcHm_v2.0_Chr6g0307001 91 PFSQAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MDANIAMNMC SSSTSTSDSS SSESSQPRNP NKAYRIKGPW SAEEDRVLTR LVERYGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPSVQHR PFSQAEDETI LAAHARYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRVRE PQDHQELDHQ GEGNIGNAAI EVMMMGNTTT SSASAASGRN 180 GSMDLDDPLT ELTLATPGIG GSVVSSSEQH HHHRSSSESF PPAGFWDVMR GVIAREVRDY 240 VSSSFSETSG LH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-57 | MYB family protein |