PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0304811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 306aa    MW: 33885.8 Da    PI: 5.2001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0304811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W + Ed+ll+d++k +G g W+ +a++ g++R++k+c++rw +yl
  RcHm_v2.0_Chr6g0304811 14 KGAWMAAEDKLLLDYIKNHGEGKWSNVAKETGLKRCGKSCRLRWMNYL 61
                            799*******************************************97 PP
2Myb_DNA-binding50.64.3e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr6g0304811  67 RGSISDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
                             78889*****************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRGPRCSKD GLNKGAWMAA EDKLLLDYIK NHGEGKWSNV AKETGLKRCG KSCRLRWMNY  60
LRPDIKRGSI SDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLAKKMAQAQ  120
SSPQSKCNNV IVQQTPDQAQ PQQQCSRVST VVPPRPPTST IAAASPLHHR TLDDFCNNVA  180
INNTNNLVKA VNSVDSRISS EDVSLSTTAT TNTTSDGDDQ LGSSPTNFMM DFNSDDHEDF  240
CKILDCDFAN LNNAIDGDDE HQGSPVLVLP KQMMDKNIQA ADFGSLASFL ESDEDWLGND  300
LNVMLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-58MYB family protein