PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0302711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 410aa MW: 45840.6 Da PI: 6.2576

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0302711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	79.5	3e-25	149	214	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf++ll+ +++++++ln++ak L +v ++RRiYDi+NVLe++nl+ k +kn++rwkg RcHm_v2.0_Chr6g0302711 149 RFDSSLGLLTKKFVRLLQDTKDRTLDLNKAAKVL---EV--QKRRIYDITNVLEGVNLLVKVSKNHVRWKG 214 6789****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MEDPSRLPRP TQFQYHRLHS HSLQAPTPSS LPSNPRRVRH FTPPPDDEDS KPLSLSDKPL 60 SSRADAYAAF SKLELGRIKE EADDCEAQTS AQATAADQKK VLNDPVSTIP KSWRGVQKIS 120 KPKVAKPIKS ETVNAESQQN GVTPVTTCRF DSSLGLLTKK FVRLLQDTKD RTLDLNKAAK 180 VLEVQKRRIY DITNVLEGVN LLVKVSKNHV RWKGHDGPGE LDDQVFKLKE EVGSLCAEEC 240 RLNDAIRERR ELIRTVKEDR NNKKYLFLTE GDILSLPCFQ NQTLIAIKAP HASTIEVLDP 300 DEDIDFPQGQ YRMMVRSATG QIDCYLLSNY QGQQEGITVK QGDSTGSSPC NNTGYCIMED 360 GGMSPEFHSL PGAEASSGMQ KIVLSHLDAN DDYWFRSEPE VSLTDLWATS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MEDPSRLPRP TQFQYHRLHS HSLQAPTPSS LPSNPRRVRH FTPPPDDEDS KPLSLSDKPL  60
SSRADAYAAF SKLELGRIKE EADDCEAQTS AQATAADQKK VLNDPVSTIP KSWRGVQKIS  120
KPKVAKPIKS ETVNAESQQN GVTPVTTCRF DSSLGLLTKK FVRLLQDTKD RTLDLNKAAK  180
VLEVQKRRIY DITNVLEGVN LLVKVSKNHV RWKGHDGPGE LDDQVFKLKE EVGSLCAEEC  240
RLNDAIRERR ELIRTVKEDR NNKKYLFLTE GDILSLPCFQ NQTLIAIKAP HASTIEVLDP  300
DEDIDFPQGQ YRMMVRSATG QIDCYLLSNY QGQQEGITVK QGDSTGSSPC NNTGYCIMED  360
GGMSPEFHSL PGAEASSGMQ KIVLSHLDAN DDYWFRSEPE VSLTDLWATS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.1	2e-86	E2F/DP family protein