PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0301751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 611aa MW: 68329 Da PI: 5.3028

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0301751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.6e-09	411	443	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+ +e+ LA+++gLt +qV +WF N R + RcHm_v2.0_Chr6g0301751 411 LPYPKDSEKVMLARQTGLTRNQVANWFINARVR 443 69*****************************88 PP
2	BELL	114.4	6e-37	269	340	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+kk+kLls+l+eVd+rYkqy++q+q v++ F+ +ag g+a pYt+lAl+aiSrhFr+L dai++qi RcHm_v2.0_Chr6g0301751 269 ERQDLQNKKTKLLSMLDEVDRRYKQYYHQMQNVVAFFDKAAGNGAAGPYTALALQAISRHFRSLHDAIKGQI 340 799*******************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MATYFQNLSN QNLLTPYPGD EKLASYPDQP SNMMMYMNQA SYPGSYTEVL SGGSFSPNKC 60 SESDGGRNEM MFIPPTSGPV RDCVGGDSLI GSPDGKRGIQ DHGLSLSLAT QIPPAVSVPS 120 FQYQYLNSSL PSVLSTSQIL GKGEFQCKGD DYSQSDEFRN FENLTSGLYD SLKTQNFSNP 180 MCSMVPKEMH SEAYLYDSLG FSNSLLNTKY LKAAQQLLDE VVNVRKALKQ SRSNKHQRTD 240 GSKETDGIRM SSDPSEPSAV SSVELSPVER QDLQNKKTKL LSMLDEVDRR YKQYYHQMQN 300 VVAFFDKAAG NGAAGPYTAL ALQAISRHFR SLHDAIKGQI QAAQRSLGEK DTPSDAQGEV 360 IPRLRYVDQQ LRQQRAFQQH GVMQHSWRPQ RGLPESSVAI LRAWLFEHFL LPYPKDSEKV 420 MLARQTGLTR NQVANWFINA RVRLWKPMIE EMYKEEFGEE MDSKSSPENV LKEGRVEFSA 480 SEDRRDELRE SMMSTTADSI EPGQLHDSKS GITKLQDHGQ RPNADDRSVY LDANENAVAT 540 YDMSGLGNAV GSEVSLALEL RHCEEHDGFP APNGSEVRGN DPEASLDCYY GDPGQQQYRF 600 GNSHLLHDFV V

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MATYFQNLSN QNLLTPYPGD EKLASYPDQP SNMMMYMNQA SYPGSYTEVL SGGSFSPNKC  60
SESDGGRNEM MFIPPTSGPV RDCVGGDSLI GSPDGKRGIQ DHGLSLSLAT QIPPAVSVPS  120
FQYQYLNSSL PSVLSTSQIL GKGEFQCKGD DYSQSDEFRN FENLTSGLYD SLKTQNFSNP  180
MCSMVPKEMH SEAYLYDSLG FSNSLLNTKY LKAAQQLLDE VVNVRKALKQ SRSNKHQRTD  240
GSKETDGIRM SSDPSEPSAV SSVELSPVER QDLQNKKTKL LSMLDEVDRR YKQYYHQMQN  300
VVAFFDKAAG NGAAGPYTAL ALQAISRHFR SLHDAIKGQI QAAQRSLGEK DTPSDAQGEV  360
IPRLRYVDQQ LRQQRAFQQH GVMQHSWRPQ RGLPESSVAI LRAWLFEHFL LPYPKDSEKV  420
MLARQTGLTR NQVANWFINA RVRLWKPMIE EMYKEEFGEE MDSKSSPENV LKEGRVEFSA  480
SEDRRDELRE SMMSTTADSI EPGQLHDSKS GITKLQDHGQ RPNADDRSVY LDANENAVAT  540
YDMSGLGNAV GSEVSLALEL RHCEEHDGFP APNGSEVRGN DPEASLDCYY GDPGQQQYRF  600
GNSHLLHDFV V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	3e-97	TALE family protein