PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0301601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 477aa MW: 51977.6 Da PI: 8.1958

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0301601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	349	387	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++++L++l+ + +K + a++L +A+ YIk Lq RcHm_v2.0_Chr6g0301601 349 RKEKLGDRIATLQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 387 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MESANLHHQH HQLQENLGHL GSSSSSSLAT APSYYGVGIK HAWTQPTTTT TNTTNLSNPS 60 NSSFNSSSSI NMVPDLGFHC WPPSISNNLN RAGSSSSIKE ELSSSSSDST FPKFTQMLTS 120 PSTTSINLDD DDYHFPTPTS LGLIKNEQKE MMMNDLSEKL LLKTLSSSGI NHQISLAGDY 180 HHHHHQQFYS SNNTHVQNFT QLMPGRSGGQ YFSQIYPSIN ISNLNQQSSP SSAISSCGSS 240 DMSLQAIDLL ASSRFSAHEP SNSHDTLGIY NKEIRHNSFG LQQMHQSRTN HHDHSLLSCG 300 TNSKISSFEN EITEVKRPGS LIEPKATQAA APKKSRLESR TPCPPLKVRK EKLGDRIATL 360 QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SSRNNKPSKA MLQRGVIEIN 420 GSNGDHERKR DLRSRGLCLV PLSCMSYVTA GTDAANATAG VSGSVNWPSP NYGHGGT

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MESANLHHQH HQLQENLGHL GSSSSSSLAT APSYYGVGIK HAWTQPTTTT TNTTNLSNPS  60
NSSFNSSSSI NMVPDLGFHC WPPSISNNLN RAGSSSSIKE ELSSSSSDST FPKFTQMLTS  120
PSTTSINLDD DDYHFPTPTS LGLIKNEQKE MMMNDLSEKL LLKTLSSSGI NHQISLAGDY  180
HHHHHQQFYS SNNTHVQNFT QLMPGRSGGQ YFSQIYPSIN ISNLNQQSSP SSAISSCGSS  240
DMSLQAIDLL ASSRFSAHEP SNSHDTLGIY NKEIRHNSFG LQQMHQSRTN HHDHSLLSCG  300
TNSKISSFEN EITEVKRPGS LIEPKATQAA APKKSRLESR TPCPPLKVRK EKLGDRIATL  360
QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ETLSVPYMKS SSRNNKPSKA MLQRGVIEIN  420
GSNGDHERKR DLRSRGLCLV PLSCMSYVTA GTDAANATAG VSGSVNWPSP NYGHGGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-50	bHLH family protein